Giovanni Palla's repositories
2022univr-medbioinfo
Teaching material for spatial transcriptomics session, Medical Bioinformatics, UNIVR
pydantic-ome-ngff
Pydantic models for OME-NGFF
SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
awesome_spatial_omics
tools and notes for spatial omics
ciclo
A functional training loops library for JAX
DUE
Code for "On Feature Collapse and Deep Kernel Learning for Single Forward Pass Uncertainty".
giovp.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
multiscale-spatial-image
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
lamindb
Manage R&D data and analyses.
napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
napari-spatialdata-feedstock
A conda-smithy repository for napari-spatialdata.
ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
ott
Optimal Transport tools implemented with the JAX framework, to get auto-diff, parallel and jit-able computations.
paste
Probabilistic Alignment of Spatial Transcriptomics Experiments
pointpats
Planar Point Pattern Analysis in PySAL
schist
An interface for Nested Stochastic Block Model for single cell analysis
spatial-alignment
Alignment of spatial genomics data using deep Gaussian processes
spatial-image
A multi-dimensional spatial image data structure for scientific Python.
squidpy-feedstock
A conda-smithy repository for squidpy.
Tangram
Spatial alignment of single cell transcriptomic data.
vitessce-python
Python API and Jupyter widget for Vitessce
xarray-schema
Schema validation for Xarray objects