This package contains code, data, and documentation related to a R/Bioconductor workshop presented in January 2013 at Rajiv Gandhi Centre for Biotechnology.
- Morning: Welcome and lectures
- 1:30 - 3:30 | Introduction to R/Bioconductor (CG)
- 4:00 - 5:00 | Microarray data retrieval & preprocessing (MD)
- Morning: lectures
- 11:00 - 12:30 | Finding differentially expressed genes (MD,CG)
- 1:30 - 3:30 | Prediction analysis (MD,CG)
- 4:00 - 5:00 | Annotation and enrichment analysis (CG)
- 9:30 - 10:30 | Clustering & visualization (MD)
- 11:00 - 12:30 | Network analysis (CG)
- 1:30 - 3:30 | Array CGH & Intermediate R (CG)
Before the workshop begins, please install, at minimum, R from the following address:
- Windows: http://cran.r-project.org/bin/windows/base/
- Other OSes: http://www.r-project.org/
If you are using Linux, it is recommended to install from your system's package manager.
RStudio is not required, but if you are new to R and/or use Windows, it is highly recommended. It is a free download from:
If you use vim, a combination of vim-slime with tmux or screen works well. If you use emacs, the ESS (Emacs Speaks Statistics) package is popular among R users.
This section contains links to supplementary information and tutorials which go beyond the general introduction given by the course.