gilesc

mdbread

Cross-platform Python reader for MS Access files

pkgbuild

Arch Linux PKGBUILDs, mostly for bioinformatics-related programs.

ahocorasick

Fast string searching in various languages (Clojure, C++)

GenomicRegions.jl

Julia package for handling sets of genomic regions, with in-memory and on-disk indexing capabilities.

h5df

Library and CLI for storing numeric data frames in HDF5

mrat

Methylated region analysis tool

pcor

Parallel computation of all-vs-all Pearson correlations

PostgreSQL.jl

PostgreSQL DBI driver

pubmed-elasticsearch

repeatseq

Accurate microsatellite genotypes from high-throughput resequencing data

scet

Significantly Co-occurring Entities in Text

ablateit-docker

AhoCorasick.jl

Julia implementation of the Aho-Corasick algorithm for fast string searching.

alpaca-lora

Instruct-tune LLaMA on consumer hardware

BioTK

Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries

ci-workshop

R/Bioconductor cancer informatics workshop at Rajiv Gandhi Centre in January 2013

cruzdb

python access to UCSC genomes database

DataFrames.jl

library for working with tabular data in Julia

docker

finetune-study

Comprehensive analysis of difference in performance of QLora, Lora, and Full Finetunes.

genome_runner

gpt4all

gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue

lobstr-code

lobSTR: a short tandem repeat profiler for next generation sequencing data

ndbapi

Python API for the Nucleic Acid Database (http://ndbserver.rutgers.edu/)

nixpkgs

Nix Packages collection

py2cytoscape

Python utilities for Cytoscape and Cytoscape.js

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

python-nvd3

Python Wrapper for NVD3 - It's time for beautiful charts

ref

A simple ncurses reference manager

rust-leveldb

LevelDB binding for Rust.