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GIFT-Surg (gift-surg)

GIFT-Surg

gift-surg

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Open-source software produced by the GIFT-Surg Consortium

Home Page:http://www.gift-surg.ac.uk/

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GIFT-Surg's repositories

NiftyMIC

NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

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GIFT-Grab

An open-source C++ and Python API for acquiring, processing and encoding video streams in real time. Supports several frame-grabber cards, standard-compliant network streams and video files. Python API is compatible with NumPy and SciPy.

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HighRes3DNet

License:Apache-2.0Stargazers:24Issues:15Issues:0

MONAIfbs

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SimpleReg

SimpleReg is a research-focused toolkit that provides tools helpful for (medical) image registration and processing.

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SlicSeg

An API and GUI application for semi-automated interactive segmentation of medical images.

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fetal_brain_seg

A toolkit for fetal brain localization and segmentation using deep learning

Language:PythonStargazers:17Issues:6Issues:5

NSoL

The Numerical Solver Library (NSoL) is a research-focused toolkit for denoising and deconvolution applications using ADMM and Primal-Dual methods.

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PySiTK

PySiTK is a research-focused toolkit containing a collection of Python helper functions. In particular it facilitates the interaction between SimpleITK and ITK.

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DyBaORF

Dymanically Balanced Online Random Forest

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FetalBrainParcellation

A tool for the automatic segmentation of fetal brain 3D T2-weighted MRI

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GiftCloudServerBuilder

GIFT-Cloud's customised fork of xnatbuilder, used to set up a GIFT-Cloud server

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GiftCloudUploader

A Java Web Start application for anonymising and uploading DICOM data to a GIFT-Cloud or XNAT server

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VolumetricReconstructionFromPrintedFilms

A research-focused toolkit developed within the GIFT-Surg project to reconstruct a volumetric representation from printed brain MR films.

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ITK_NiftyMIC

This repository contains numerous additional filters and functions to extend the standard (Wrap)ITK Release 4.13. It is a necessary requirement in order to use NiftyMIC and related toolkits.

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NiftyMatch

A library featuring GPU implementations of feature detection and matching algorithms.

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Xono2L

LabVIEW-compatible, extensible C++ API for capturing live ultrasound streams

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SPOT-A-NeonatalRabbit

Segmentation Propagation on Target (...as a Neonatal Rabbit)

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:4Issues:1

FetalBrainSegmentation_MONAI

Tool for fetal brain segmentation in MRI

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:1Issues:1Issues:7

lie_exponential

Numerical computation of the Lie exponential for stationary velocity fields.

License:BSD-3-ClauseStargazers:1Issues:0Issues:0

MRImultiAtlasForNeonatalRabbitBrain

Code for the benchmarking and validation of the Neonatal Rabbit brain Multi-Atlas

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vessel-tools

Scripts and utility programs for extracting and processing vasculature

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puma

Python Unified Multi-tasking API (PUMA)

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endocal

A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes

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GiftCloudServerModule

GIFT-Cloud's customised server module, used to customise a GIFT-Cloud server

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RabbitBrainAnalysis

Full pipeline for processing, segmentation and data analysis of a rabbit brain scan. See also https://www.sciencedirect.com/science/article/pii/S1053811918305366?via%3Dihub

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