Antonio Fernandez-Guerra's repositories
bam-filter
A simple tool to calculate metrics from a BAM file and filter references with uneven coverages
derep-genomes
A simple genome de-replication tool using fastANI and a bit of graph-based analysis
collapse-gtdb-tree
A simple tool to collapse a GTDB to a certain rank.
get-biomes
A simple tool to get biomes related data from MGnify and ENA
aMGSIM-smk
A snakemake workflow to generate multiple synthetic datasets using aMGSIM
anvio.org
The anvi'o community web page
bioconda-recipes
Conda recipes for the bioconda channel.
decOM
🗑️🦷 decOM 🦷🗑️
dmg-reads
A simple tool to extract damaged reads from BAM files
FunDatA
A repository for the Fundamentals Data Analysis course
get-ancient-vf
A simple tool to find virulence factors in ancient metagenomes
get-read-percid
A simple tool to extract references from BAM files and get read statistics
get-reads-taxonomy
A simple tool to extract reads from specific taxonomic groups BAM files
kegg-db-setup
A simple workflow that creates a dereplicated KEGG GENES database by KO.
metaDMG-core
metaDMG
metaDMG-cpp
metaDMG-cpp
metaDMG-live-dashboard-EBAME7
metaDMG Live Dashboard for EBAME7
MIxS-MInAS.github.io
Website for the MixS-MInAS ancient DNA sequence metadata checklist project