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Antonio Fernandez-Guerra (genomewalker)

genomewalker

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Antonio Fernandez-Guerra's starred repositories

math-as-code

a cheat-sheet for mathematical notation in code form

License:MITStargazers:14729Issues:417Issues:47

patchwork

The Composer of ggplots

Language:RLicense:NOASSERTIONStargazers:2461Issues:46Issues:346

drake

An R-focused pipeline toolkit for reproducibility and high-performance computing

Language:RLicense:GPL-3.0Stargazers:1340Issues:34Issues:1059

skimr

A frictionless, pipeable approach to dealing with summary statistics

Language:HTMLStargazers:1108Issues:32Issues:262

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Language:CLicense:GPL-3.0Stargazers:780Issues:19Issues:319

waffle

:maple_leaf: Make waffle (square pie) charts in R

Language:RStargazers:779Issues:29Issues:71

ggsci

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

Language:RLicense:GPL-3.0Stargazers:661Issues:18Issues:34

uwot

An R package implementing the UMAP dimensionality reduction method.

Language:RLicense:GPL-3.0Stargazers:317Issues:21Issues:111

parasail

Pairwise Sequence Alignment Library

Language:CLicense:NOASSERTIONStargazers:241Issues:18Issues:94

ggstance

Horizontal ggplot2 components

Language:RStargazers:201Issues:10Issues:32

metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Language:CLicense:GPL-3.0Stargazers:174Issues:9Issues:89

ggmosaic

Mosaicplots in the ggplot2 framework

Language:RStargazers:167Issues:13Issues:53

umapr

:no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction

Language:RLicense:NOASSERTIONStargazers:112Issues:15Issues:25

evolocity

Evolutionary velocity with protein language models

Language:PythonLicense:MITStargazers:83Issues:6Issues:12

gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

Language:PythonLicense:BSD-3-ClauseStargazers:73Issues:7Issues:66

paladin

Protein Alignment and Detection Interface

Language:CLicense:MITStargazers:60Issues:11Issues:41

metakallisto

Using kallisto for metagenomic analysis

Language:PythonStargazers:50Issues:11Issues:1

NGSNGS

NGSNGS: Next generation simulator for next generation sequencing data

Language:C++Stargazers:45Issues:5Issues:15

bertax

Taxonomic classification of DNA sequences

Language:PythonLicense:GPL-3.0Stargazers:43Issues:0Issues:0

cetcolor

CET Perceptually Uniform Colour Maps for R

Language:RStargazers:31Issues:3Issues:8

Hippocamplus

A place to gather useful information I keep on forgetting.

Language:HTMLLicense:GPL-3.0Stargazers:30Issues:5Issues:7

flanker

Gene-flank analysis tool

Language:PythonLicense:MITStargazers:25Issues:4Issues:31

Disco

Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler

Language:JavaLicense:GPL-3.0Stargazers:24Issues:4Issues:13

metacherchant

Language:JavaLicense:MITStargazers:18Issues:11Issues:7

PSSMGen

Generates consistent PSSM and/or PDB files for protein-protein complexes

Language:PythonLicense:Apache-2.0Stargazers:17Issues:3Issues:14

EnDED

EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.

Language:C++License:GPL-3.0Stargazers:8Issues:1Issues:4

MGSIM

Metagenome read simulation of multiple synthetic communities

Language:PythonLicense:MITStargazers:8Issues:1Issues:5

FragGeneScanPlusPlus

Scalable high-throughput short-read open reading frame prediction

Language:CLicense:GPL-3.0Stargazers:7Issues:6Issues:0

adrsm

Ancient DNA Read Simulator for Metagenomic

Language:HTMLLicense:MITStargazers:5Issues:2Issues:4

BCT

BCool Trans

Language:C++Stargazers:2Issues:4Issues:1