galaxyproject / SARS-CoV-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

https://covid19.galaxyproject.org

galaxyproject/SARS-CoV-2 Issues

Error 404 on https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis-on-se-data links from https://covid19.galaxyproject.org/genomics/global_platform/#what-is-this page
Updated 3 years ago
Wrong page included in /genomics/no-more-business-as-usual/
Updated 3 years ago
Building website locally
Closed 3 years ago3
SRR11313490 and SRR11313499
Closed 3 years ago23
vcf-vcf intersect error
Updated 4 years ago5
ARTIC workflow error during Realigh Read with samtools
Closed 4 years ago4
MultiQC does not accept genome results produced by QualiMap BamQC
Closed 4 years ago1
Metadata Update
Updated 4 years ago
Consensus genome and variant calling from Illumina only
Updated 4 years ago8
snpeff build issues with NC_045512.2 genbank record
Closed 4 years ago3
Missing Indels
Updated 4 years ago7
Setting Unicycler parameters for workflow.
Updated 5 years ago6
Error while running gffread.
Closed 5 years ago5
Source for number of variants and samples on main page
Updated 5 years ago4
Error while running Unicycler.
Closed 5 years ago3
License
Closed 5 years ago1
Docker image doesn't appear to contain hg38
Closed 5 years ago4
Fix links for the workflow badges for every instance
Closed 5 years ago3
Better cover page
Closed 5 years ago7
Little question about the datasets you used
Closed 5 years ago4
Is "COVID-19 genome" a correct description?
Closed 5 years ago4
Add a short description of how to use the jupyter notebooks with Galaxy
Updated 5 years ago12
Do we want workflow .ga files as part of the repo?
Closed 5 years ago3
Should we rename MCRA to MRCA?
Closed 5 years ago1
Explain outputs and choice of tree in MCRA analysis
Closed 5 years ago3
Alignment section needs editing
Closed 5 years ago
Recombination workflow link needs fixing
Closed 5 years ago2
Should variation analysis build on preprocessing?
Closed 5 years ago3
Incompatibility between Pre-processing and Assembly wfs
Closed 5 years ago3
Add EU icon to readme
Closed 5 years ago
MCRA workflow requires unspecified user input
Closed 5 years ago3