gabefoley

pybioviz

bioinformatics visualization tools with pyviz/bokeh

Awesome-Multimodal-Large-Language-Models

:sparkles::sparkles:Latest Advances on Multimodal Large Language Models

SSDraw

CLEAN

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

chumby

A package for making tree-based visualizations for embedding vectors

indelmip

deep_learning_curriculum

Language model alignment-focused deep learning curriculum

design_tools

A compilation of deep learning methods for protein design

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.

act

Run your GitHub Actions locally 🚀

quasar-app-extension-auto-routing

"Nuxt-like" routing in Quasar projects

vue-cwl

Visualizer of CWL (Common Workflow Language) workflows for Vue

tools

Python package with helper tools for the nf-core community.

sublime-nextflow

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

BioNextflow

A collection of modules and sub-workflows for Nextflow

nextflow-demos

Example Nextflow pipelines and programming techniques

paraMSA

Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values

unistrap

Reliability measure of inferred phylogenetic trees

master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

phylopipe

Pipeline to build a massive tree from global data

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development

sample-ci-python

Sample project for setting-up Gitlab CI/CD with pytest and pytest-cov for Python-based applications

MusaicFM

Screensaver inspired by Apple’s inbuilt iTunes Screensaver. It can display Artwork by Spotify or last.fm Profile Data.

bulwark

Bulwark is a package for convenient property-based testing of pandas dataframes.

pyvenn

Python module for plotting Venn diagrams of 2..6 sets

pygraphistry

PyGraphistry is a Python library to quickly load, shape, embed, and explore big graphs with the GPU-accelerated Graphistry visual graph analyzer

sarscov2phylo

Global phylogenies of SARS-CoV-2 sequences

github-cheat-sheet

A list of cool features of Git and GitHub.