Gabe Foley's starred repositories
Awesome-Multimodal-Large-Language-Models
:sparkles::sparkles:Latest Advances on Multimodal Large Language Models
deep_learning_curriculum
Language model alignment-focused deep learning curriculum
design_tools
A compilation of deep learning methods for protein design
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
quasar-app-extension-auto-routing
"Nuxt-like" routing in Quasar projects
sublime-nextflow
Nextflow workflow syntax highlighting and snippets for Sublime Text 4
BioNextflow
A collection of modules and sub-workflows for Nextflow
nextflow-demos
Example Nextflow pipelines and programming techniques
master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
BenchmarkAlignments
Benchmark empirical datasets for phylogenetic method development
sample-ci-python
Sample project for setting-up Gitlab CI/CD with pytest and pytest-cov for Python-based applications
pygraphistry
PyGraphistry is a Python library to quickly load, shape, embed, and explore big graphs with the GPU-accelerated Graphistry visual graph analyzer
sarscov2phylo
Global phylogenies of SARS-CoV-2 sequences
github-cheat-sheet
A list of cool features of Git and GitHub.