gabefoley / SeqScrub

Website for cleaning FASTA headers and newick strings

SeqScrub

Website for cleaning FASTA headers and newick strings

SeqScrub is now live at www.gabefoley.com/seqscrub

Upload a FASTA file and optionally a tree file in Newick format, and SeqScrub can clean up, annotate and check for obsolete sequences all in the click of a button!

SeqScrub was published in BioTechniques in 2019.

doi.org/10.2144/btn-2018-0188

If you use it, please cite -

Foley G, Sützl L, D'Cunha SA, Gillam EM, Bodén M. SeqScrub: a web tool for automatic cleaning and annotation of FASTA file headers for bioinformatic applications. Biotechniques. 2019 Aug;67(2):50-54. doi: 10.2144/btn-2018-0188. Epub 2019 Jun 20. PMID: 31218882.