gabefoley / PO_Viterbi

Example code for running Partial Order Viterbi alignment method

Partial Order Viterbi

This code runs a Partial Order Alignment variant of the Viterbi algorithm.

It isn't currently in development.

Installation

1. Clone the repo

git clone https://github.com/gabefoley/PO_Viterbi

2. Install requirements

pip install -r requirements.txt

3. Try a test alignment from the tests folder

python -m pov/__main__.py -a tests/files/simple_seqs/simple_6.fasta -o ./simple_6.aln

This should give you an alignment that looks like this ->