funkey

sopnet

neuron reconstruction pipeline

skeletopyze

Simple python module for volume skeletonization.

util

handy things in here, needed by other modules

imageprocessing

general pipeline components used for image processing

cohear

A simple and fast signalling library with automatic slot-callback association.

pymfast

Python solver for the minimal feedback arc set problem

ted

bad_ass

BAD Anisotropic Section Sanitizer

caffe_luigi

luigi scripts to train and evaluate

candidate_mc

knossos_python_tools

microtubules

pymatch

A simple python module to compute the Hungarian matching using an LP.

tools

A volume viewer, an image viewer, and a skeleton viewer.

awesomerc

My Awesome WM setup

caffe

Caffe: a fast open framework for deep learning. With OpenCL and CUDA support.

cmc_experiments

experimentdb

A simple key-value database interface to store experiment results, focusing on ease of use.

imglib2-realtransform

neuroglancer

WebGL-based viewer for volumetric data

pymalis

Simple python module to compute the MALIS loss.

region_features

A collection of 2D/3D region features.

report

Simple python module to generate bokeh plots from (almost) arbitrary pandas data frames.

sg_gui

Scopegraph components for simple OpenGl GUIs

skeleton_tools

skeleton_tools

ted-conda

Scripts to create a conda package for pyted

tex

Collection of tex packages and a Makefile based build system.

vigra

a generic C++ library for image analysis

yanta

Yet another note taking application.

yantarantana

yanta, reborn