Guangyuan(Frank) Li's repositories
python_visualization_tutorial
A comprehensive guide of how to make publication-ready figures in python
DeepImmuno
Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
Linux_HandBook_Bioinformatics
A Linux Shell Handbook for Bioinformatician
pandas_by_examples
A compendium of useful, interesting, inspirational usage of pandas functions, each example will be an ipynb file
SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
scTriangulate
scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
exercise_codes
programming exercise codes
Secondary_Structure_Predictor
A KNN model to predict protein secondary structure using its primary sequence
Database_management_system
C Implementation of a simple Database management system (DBMS), including storage manager and buffer manager.
Meta-analysis-TCGA
A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma
BMIN7099
BMIN7099/CS7099: Introduction to bioinformatics, University of Cincinnati, Spring semester 2022
DeepImmuno-web
The web tool for the core functionality of DeepImmuno
NeoAntigenWorkflow
NeoAntigenWorkflow
public_html
Planning to be a repo to expose files to web-accessible folder
test_git
I want to use this repo to understand some operations of git
UCSC_Custom_Track_Builder
Ease the workload for building UCSC custom track
weblogo_peptide
Peptide weblogo generation using pure Python