Guangyuan(Frank) Li (frankligy)

frankligy

Geek Repo

Company: New York University

Location:New York

Home Page:https://frankligy.github.io/public_html/myself/CV.pdf

Twitter:@FrankLI55917967

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Guangyuan(Frank) Li's repositories

python_visualization_tutorial

A comprehensive guide of how to make publication-ready figures in python

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DeepImmuno

Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

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Linux_HandBook_Bioinformatics

A Linux Shell Handbook for Bioinformatician

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pandas_by_examples

A compendium of useful, interesting, inspirational usage of pandas functions, each example will be an ipynb file

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SNAF

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation

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scTriangulate

scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

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ScPyT

Scientific Computing in Python, a practical and ultimate tutorials

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BayesTS

Quantifying Tumor Specificity using Bayesian probabilistic modeling for drug target discovery and prioritization

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exercise_codes

programming exercise codes

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numbaMCL

CUDA-enabled parallel Markov Chain Clustering, implemented in python numba

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Secondary_Structure_Predictor

A KNN model to predict protein secondary structure using its primary sequence

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AltNeo-BT

Automated toolkit for prioritizing Neoantigens for humoral immunity (AltNeo-Bcell) and cellular immunity (AltNeo-Tcell) from bulk-RNA seq

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Database_management_system

C Implementation of a simple Database management system (DBMS), including storage manager and buffer manager.

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Meta-analysis-TCGA

A systematic meta-analysis of differentially expressed genes in melanoma and glioblastoma

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BMIN7099

BMIN7099/CS7099: Introduction to bioinformatics, University of Cincinnati, Spring semester 2022

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DeepImmuno-web

The web tool for the core functionality of DeepImmuno

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NeoAntigenWorkflow

NeoAntigenWorkflow

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public_html

Planning to be a repo to expose files to web-accessible folder

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test_git

I want to use this repo to understand some operations of git

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UCSC_Custom_Track_Builder

Ease the workload for building UCSC custom track

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weblogo_peptide

Peptide weblogo generation using pure Python

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