Frank Austin Nothaft's repositories
server
A reference implementation of the APIs defined in the schemas repository.
bits
Firebox Benchmarks
homebrew-science
Scientific formulae for the Homebrew package manager
bdg-services
Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster.
picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.
xASSEMBLEx
An ADAM/GraphX based assembler. Apache 2 licensed.
snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
parquet-mr
Java readers/writers for Parquet columnar file formats to use with Map-Reduce
RefVariationTaskTeam
Work on data models and APIs for graph structures that represent the human reference genome plus common human genetic variants. Includes mapping to a reference genome, and standardization of the mechanism for referring to variants.
sequence-graphs
Implementation of the Sequence Graphs data model
vcfimp
Strict VCF Parser