fnothaft / sequence-graphs

Implementation of the Sequence Graphs data model

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##Dependencies

###To install Apache Spark with GraphX

git clone https://github.com/apache/incubator-spark
cd incubator-spark
git checkout v0.9.0-incubating
sbt publish-local

###To install vcfimp

git clone https://github.com/adamnovak/vcfimp.git
cd vcfimp
git checkout v0.6.1
sbt publish-local

##Installation

###Building

sbt stage

###Testing

sbt test

###Running command-line tools

./importVCF.sh <vcf file> <sample name>

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Implementation of the Sequence Graphs data model


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