Fabienne Krauer's starred repositories
r-pharma2022
The material for the R/Pharma workshop about end to end clinical trials
covid-19-tracker
This is the data repository for the Imperial College London YouGov Covid 19 Behaviour Tracker Data Hub.
DIMESampler.jl
Differential-Independence Mixture Ensemble (DIME) MCMC sampling for Julia
rethinking
Statistical Rethinking course and book package
covidm-mtd-Omi
Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).
InferenceObjects.jl
Storage for results of Bayesian inference
MonkeypoxUK
Some code for monkeypox
Intro-PMCMC
Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
KenyaCoVaccines
Vaccine modelling
SimulatedNeuralMoments.jl
package for Bayesian and classical estimation and inference based on statistics that are filtered through a trained neural net
hhh4-workshop
Workshop on hhh4 and the endemic-epidemic framework
StructuralIdentifiability.jl
Fast and automatic structural identifiability software for ODE systems
BDA_course_Aalto
Bayesian Data Analysis course at Aalto
adventofcode2021
Advent of Code 2021
Pathogen.jl
Simulation, visualization, and inference of individual level infectious disease models with Julia
ModelingToolkit.jl
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
DifferentialEvolutionMCMC.jl
A Julia package for Differential Evolution MCMC