Construction of binary wavelet tree using RRR structure.
Project repository for Bioinformatics course held at Faculty of Electrical Engineering and Computing, University of Zagreb.
Title
Construction of binary wavelet tree using RRR structure.
Team members
- Jure Čular, 0036479001
- Bartol Freškura, 0036480392
- Filip Gulan, 0036479428
Repository contents
- doc directory contains the project documentation sources. Check documentation.pdf file for more details about the project and measurement results
- src directory contains C++ source code of the project
- tests directory contains unit tests and measurements tests
- Branch feature/packing-unpacking-sequence contains coded RRR sequence as described in documentation
Compiling
- Position working directory in the root folder of project.
- Run commands:
This command will compile the project to a
$ cmake CMakeLists.txt $ cmake --build ./ --target bioinformatics_project
bioinformatics_project
executable file in the root folder of project.
Run instructions
Program expects 3 arguments:
- filename of the sequence in FASTA format
- filename of the commands file to be executed
- filename of the output file.
For running given example:
$ ./bioinformatics_project example/ecoli_seq.txt example/ecoli_commands.txt example/ecoli_outs.txt > example/ecoli_stats.txt