fepegar / torchio

Medical imaging toolkit for deep learning

https://torchio.org

fepegar/torchio Issues

Unexpected transformation when using RandomAffine/RandomElasticDeformation
Updated 2 months ago5
Issue when using PyTorch Lightning and TorchIO
Closed 2 months ago8
RandomGhosting: restore parameter has no effect
Updated 2 months ago2
Supporting PyTorch 2.3
Closed 2 months ago23
about the image shape
Closed 2 months ago1
Cannot copy subclass of Subject with keyword arguments
Closed 2 months ago2
Image intensity augmentations
Updated 3 months ago1
Resample an image by providing only the target affine
Closed 5 months ago1
Queue is not respecting the batch size
Closed 6 months ago1
Add pythonic slicing support to torchio.Image
Closed 6 months ago2
GridAggregator does not support smaller output than input
Closed 6 months ago2
RandomAffine raises an error when isotropic=True and 3 elements are given for scales
Closed 7 months ago10
masking_method in Mask class is not saved as argument (preventing applying the inverse transform)
Closed 9 months ago
get_subjects_from_batch has a hick-up with int metadata
Closed 9 months ago5
Error when using a lambda function as masking_method in ZNormalization
Closed a year ago2
Seed is not working
Closed a year ago2
bug in rotation part of tio.transforms.RandomAffine
Closed a year ago4
Halve queue length when using DDP
Closed a year ago2
tio.Resample does not work with custom image class
Closed a year ago2
RescaleIntensity - multiple calls
Closed a year ago9
Return sampled parameters upon request
Closed a year ago3
Setting NUM_SAMPLES when using sampler with Queue
Updated a year ago3
Resample
Closed a year ago
Silenced exception makes it harder to debug custom Transforms
Closed a year ago5
Custom loader not used when loading data lazily
Closed a year ago2
The Affine matrix does not change after applying the augmentations
Closed a year ago3
Different transforms applied to CT and label
Closed 2 years ago11
Suggestions the modifying default value of prefetch_factor and the argument to set it for minimize the blocking-bottleneck between fetch subject and generate patch in Queue
Closed 2 years ago1
Pad modifies labels unexpectedly
Closed 2 years ago4
Wrong link to docs in Getting Started tutorial
Closed 2 years ago2
Patch Based Training With Queue Is Not Working Properly
Closed 2 years ago1
Combined Affine/Elastic augmentations
Updated 2 years ago1
(Optional) state_dict for each transform (reproducibility)
Closed 2 years ago2
The rotation given by Random Affine not accurate
Closed 2 years ago5
(Potential) Reversible RescaleIntensity Transform
Closed 2 years ago4
Proposal of a new way for DDP, Distributed Sampler, and Queue to work
Closed 2 years ago3
Resize sometimes adds a dimension to LabelMap images
Closed 2 years ago5
GridSampler without subject for validation
Closed 2 years ago3
Documentation is not built
Closed 2 years ago
`masked_select` on Z-Normalization slower than indexing
Closed 2 years ago2
Tests for queue are failing on Windows
Updated 2 years ago1
Torchio Transformation Does not Working properly
Closed 2 years ago2
There is something wrong with the image origin
Closed 2 years ago4
After resample ,my label becomes zero tensor!
Closed 2 years ago4
Feature proposal: TorchIO hub - A system to store and fetch transform objects for reproducibility
Updated 2 years ago6
Order of the elements in the queue changes unexpectedly
Closed 2 years ago4
CropOrPad with marginally different Origins
Closed 2 years ago2
Image get loading when __copy__ is called
Closed 2 years ago
Wrong number of 'samples_per_volume' sampled within one epoch
Closed 2 years ago7
FileNotFoundError: File not found: "affine"
Closed 2 years ago9