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http://www.ccb.jhu.edu/people/florian/

Florian Breitwieser's starred repositories

keeweb

Free cross-platform password manager compatible with KeePass

Language:JavaScriptNOASSERTION12176 230 1977

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonBSD-3-Clause3135 160 792

msys2

A software distro and building platform for Windows

advanced-shiny

🤹 Shiny tips & tricks for improving your apps and solving common problems

Language:R1196 1140

Raspberry-Pi-Looper-synth-drum-thing

My first venture into raspberry pi stuff. Running a custom pure data patch I've been working on for a couple years on a Raspberry Pi 3. This project took a couple months and I'm still tweaking stuff here and there but it's pretty much complete, it even survived it's first live show!

Language:C++986 125 7

shinyWidgets

shinyWidgets : Extend widgets available in shiny

Language:RGPL-3.0819 22 617

networkD3

D3 JavaScript Network Graphs from R

Language:R648 60 219

bowtie2

A fast and sensitive gapped read aligner

Language:C++GPL-3.0647 30 419

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language:C++GPL-3.0578 36 331

hisat2

Graph-based alignment (Hierarchical Graph FM index)

Language:C++GPL-3.0465 38 355

vim-buffet

IDE-like Vim tabline

Language:Vim ScriptMIT404 6 48

shinycssloaders

⌛ Add loading animations to a Shiny output while it's recalculating

Language:CSSNOASSERTION397 10 78

FastANI

Fast Whole-Genome Similarity (ANI) Estimation

Language:C++Apache-2.0358 13 126

hierarchical-models

A Visual Introduction to Hierarchical Modeling

Language:JavaScript272 11 3

shinyjqui

jQuery UI Interactions and Effects for Shiny

Language:RNOASSERTION269 10 98

bioSyntax

Syntax highlighting for computational biology

Language:ShellGPL-3.0252 17 49

sparkline

jQuery Sparkline HTML Widget for R

Language:JavaScriptNOASSERTION243 26 28

clustergrammer

An interactive heatmap visualization built using D3.js

Language:JavaScriptMIT231 24 46

sequenceTubeMap

displays multiple genomic sequences in the form of a tube map

Language:JavaScriptMIT177 14 252

googleAuthR

Google API Client Library for R. Easy authentication and help to build Google API R libraries with OAuth2. Shiny compatible.

Language:RNOASSERTION173 10 203

sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

Language:C++MIT151 9 12

DAS_Tool

DAS Tool

Language:RNOASSERTION135 9 96

ggraptR

Rapid and Pretty Things in R : A shiny graphical user interface for your favourite ggplot graphics in R

Language:R76 16 92

r-index

An optimal space run-length Burrows-Wheeler transform full-text index

Language:C++MIT55 2 3

D3partitionR

R package to visualise interactively hierarchical data.

Language:JavaScript40 4 23

TreeToReads

Pipeline to generate NGS reads from a phylogeny

Language:PythonNOASSERTION36 5 26

jsTree

R htmlwidget for inspecting heirachal structures with the ‘jQuery’ ‘jsTree’ Plugin.

Language:HTMLNOASSERTION30 7 14

MetaSUB_CAP

A comprehensive pipeline for short read metagenomic data

Language:PythonMIT24 11 27

SRAdb-app

Server and UI files for SRAdp WebApp

Language:R900

esp-index-I

a grammar based self-index for fast query searches

Language:C++BSD-3-Clause500