Giters
snacktavish
/
TreeToReads
Pipeline to generate NGS reads from a phylogeny
Geek Repo:
Geek Repo
Github PK Tool:
Github PK Tool
Stargazers:
36
Watchers:
5
Issues:
26
Forks:
14
snacktavish/TreeToReads Issues
Reproducible results
Updated
5 years ago
Comments count
2
Off-by-one error when reporting the number of contigs in the genome
Closed
5 years ago
Comments count
1
Fix README.md rendering to match new standard
Closed
6 years ago
Comments count
1
output VCF of SNPs
Updated
6 years ago
Comments count
2
Parallelization
Updated
7 years ago
Comments count
1
include TTR version number in output files
Updated
8 years ago
Comments count
1
fix weird line wrapping
Updated
8 years ago
add indels
Closed
8 years ago
tip labels with underscores
Closed
8 years ago
Comments count
1
Streamline tests
Closed
9 years ago
Clarify readme
Closed
9 years ago
Create a docker image
Closed
9 years ago
Lowercase nucleotides is an issue
Closed
9 years ago
Comments count
1
Request: a script to figure out input parameters
Updated
9 years ago
Comments count
1
compression
Closed
9 years ago
Comments count
5
Add ART to the package
Updated
9 years ago
Add license
Closed
9 years ago
Comments count
4
Just running treetoreads.py did a whole lot of stuff?
Closed
9 years ago
Comments count
3
Don't force /usr/bin/python
Closed
9 years ago
Comments count
1
Correction to brew install instructions
Updated
9 years ago
Comments count
2
Prefer pip2 install for dendropy
Closed
9 years ago
Check 10 recomendations
Closed
9 years ago
Comments count
5
config file
Closed
9 years ago
check for dendropy and handle error if absent
Closed
9 years ago
Comments count
1
Read nexus tree files
Closed
9 years ago
Comments count
1
Write a tutorial
Closed
9 years ago
Comments count
1