fbnrst

multistart-minimize

A multistart global optimization algorithm for SciPy

SoundRecorder

A simple sound recording app implementing Material Design

Gillespie

an implementation of the Gillespie algorithm

anndata

Annotated data.

axolotl-calculations-phd

Calculations performed for the axolotl chapter of my PhD thesis

bioc_docker

Docker containers for Bioconductor

C14

Maximum-Likelihood estimation of the dynamics of hippocampal neurogenesis in adult humans

cython

A Python to C compiler

example-requirements

A Binder-compatible repo with a requirements.txt file

hippocampus_toy_model

First ideas for a quantitative model of neurogenesis in the adult hippocampus. Here, implement a toy ODE model with interactive controls as demo for Rupert.

iminuit

Interactive Minimization Tools based on Minuit

ipycache

Defines a %%cache cell magic in the IPython notebook to cache results of long-lasting computations in a persistent pickle file

markdown-licenses

A collection of open source licenses in Markdown format. Contributions are always welcome!

mybinder-pymc-conda

Test if pymc works in mybinder when installing pymc via conda

numba

NumPy aware dynamic Python compiler using LLVM

numba_tutorial_scipy2016

Numba tutorial materials for Scipy 2016

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pyabc

Parallel Approximate Bayesian Computation - Sequential Monte Carlo for Python

pymc

PyMC: Bayesian Stochastic Modelling in Python

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

pypairs

PyPairs - A python scRNA-Seq classifier

Rost-Rodrigo-Albors-et-al-2016

Contains data and source code for data anlysis performed for Rost, Rodrigo Albors et al., 2016

scipy

Scipy library main repository

seaborn

Statistical data visualization using matplotlib

spols

Supplement-to-Rodrigo-Albors-et-al-2015

Supplementary notebook to the article "Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration"

test

tudscr

TUD-KOMA-Script

velocity_profile_MC

Monte Carlo Simulation for Velocity Profile

velocyto.py

RNA velocity estimation in Python