Fabian Rost's repositories
celotto_2023
scRNAseq unravels the transcriptional network underlying zebrafish retina regeneration
Heinke_2020
Diploid hepatocytes drive physiological liver renewal in adult humans
anndata
Annotated data.
Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
bioservices
Access to Biological Web Services from Python.
C14_liver
Analysis of C14 liver data
cellxgene-gateway-proxy-example
Cellxgene proxy example setup
diffxpy
Differential expression analysis for single-cell RNA-seq data.
gcf-docker
Docker files for autmated buids at dockerhub
lange_single-cell_2019
Single cell sequencing analysis for Lange et al., 2019
lo2s
Linux OTF2 Sampling - A Lightweight Node-Level Performance Monitoring Tool
map-of-github-data
This repository contains tiles and data for the map of github
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
metricq-python
🐍 The MetricQ Python interface
pybiomart
A simple pythonic interface to biomart.
pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
single-cell-best-practices
https://www.sc-best-practices.org
travis-ci
an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)