farhadm1990 / biolecter.xt

Biolecter_xt R package

An R package to generate quality plots from Biolecter XT machine.

This package is compatible with biolecter XT model output which is an excel file with different sheets inside. The function takes directory to the excel file, a working directory for the output files, the number of sheets in the excel file (very important), and a binary (TRUE/FALSE) for the presence of biological (or technical) replicates. The funcition, then, generates timeseries plots of different filterset values over a range of speciefic time

NOTE: this package is only tunned for four filtersets, Biomass, pH, Riboflavine, and DO

Installation

1. Isntall and library devtools pakcage on your machine

install.packages("devtools")
library(devtools)

2. Download and isntall biolecter

devtools::install_github("farhadm1990/biolecter.xt")
library(biolecter.xt)

3. Rinning biolecter_xt function

biolecter.xt::biolect_xt(path_to_biolector_xlsx="path_to_file.xlsx",
working_dir="output_directory",
caliberation= "both", #to show calibrated (TRUE), raw (FALSE) or both of them "both".
n_sheets= 8, #Number of sheets in the output xlsx dataset (oblicatory).
replic= TRUE #if you have biological/technical replica
)

An example output plot