Fairlie Reese's repositories
LR-splitpipe
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
paper_rnawg
Data processing scripts and figure recreation for the ENCODE4 RNA paper
lab_pipelines
Pipelines for analyzing data for different protocols in the Mortazavi lab
2021_c2c12
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
200812_mats
Analysis related to PacBio datasets.
210413_pgp1
Analysis of PGP1 and PGP1-derived neurons and astrocytes
210830_ucd_workshop
Code for analysis done for the 2021 UCD IsoSeq workshop
GSEApy
Gene Set Enrichment Analysis in Python
hopper
Diverse sampling for single-cell datasets
lapa
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
pyranges
Performant Pythonic GenomicRanges
python-ternary
:small_red_triangle: Ternary plotting library for python with matplotlib
scisorseqr
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
seaborn
Statistical data visualization in Python
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)