Python 3 code for polygonizing CompuCell3D lattices. This currently works for epithelial tissue: for cells in the tissue a polygon is created from the vertices defined by lattice sites which contact multiple cells. For boundary cells, the part of them that protrudes outwards from the tissue is approximated with a circular arc.
Python 3 code for polygonizing CompuCell3D lattices. This currently works for epithelial tissue: for cells in the tissue a polygon is created from the vertices defined by lattice sites which contact multiple cells. For boundary cells, the part of them that protrudes outwards from the tissue is approximated with a circular arc.
GNU General Public License v2.0