UENO M.'s repositories
root
The official repository for ROOT: analyzing, storing and visualizing big data, scientifically
PDBTools.jl
Simple structure and functions to read and write PDB files
alphafold-multistate
Selective prediction of protein's alternative conformers using annotated templates
lfortran
Official main repository for LFortran
IRust
Cross Platform Rust Repl
MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
xontrib-jupyter
Xonsh jupyter kernel allows to run Xonsh shell code in Jupyter, JupyterLab, Euporia, etc.
zsh-jupyter-kernel
Z shell kernel for Jupyter Notebook
AFsample2
Modelling protein conformational landscape with Alphafold
eunos-1128.github.io
My own website made using Jekyll Theme
yash
Yet another shell
Ringtail
Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
rosetta
The Rosetta Bio-macromolecule modeling package.
mojo
The Mojo Programming Language
chroma
A generative model for programmable protein design
ColabFold
Making Protein folding accessible to all!
gms_natcomms_1705932980_data
Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
MMGX
MMGX: Multiple Molecular Graph eXplainable Discovery
rf_diffusion_all_atom
Public RFDiffusionAA repo
Uni-Dock
Uni-Dock: a GPU-accelerated molecular docking program
AutoDock-Vina
AutoDock Vina
biopython
Official git repository for Biopython (originally converted from CVS)
waterkit
Tool to predict water molecules placement and energy in ligand binding sites
OmegaFold
OmegaFold Release Code