UENO M.'s repositories
eunos-1128.github.io
My own website made using Jekyll Theme
af2_conformations
A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
AF2_GPCR_Kinase
A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2
AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
alphafold-multistate
for noMSA with annotated templated
biopython
Official git repository for Biopython (originally converted from CVS)
alphafold_finetune
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
AutoDock-Vina
AutoDock Vina
chroma
A generative model for programmable protein design
ColabFold
Making Protein folding accessible to all!
gms_natcomms_1705932980_data
Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
manyfold
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
MMGX
MMGX: Multiple Molecular Graph eXplainable Discovery
OmegaFold
OmegaFold Release Code
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
rf_diffusion_all_atom
Public RFDiffusionAA repo
Ringtail
Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
Uni-Dock
Uni-Dock: a GPU-accelerated molecular docking program
Uni-Mol
Official Repository for the Uni-Mol Series Methods
waterkit
Tool to predict water molecules placement and energy in ligand binding sites
xeus-r
Jupyter kernel for the R programming language