Erin Diel's repositories
bio-formats-documentation
Bio-Formats documentation
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
bioformats2raw
Bio-Formats image file format to raw format converter
CellProfiler
An open-source application for biological image analysis
omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
omero-ms-zarr
Experimental micro-service for implementing the Zarr spec over HTTP
omero-user-scripts
Plugins for OMERO
IDC-Tutorials
Self-guided notebook tutorials to help get started with using IDC
napari
napari: a fast, interactive, multi-dimensional image viewer for python
omero-parade
OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel
python-bioformats
Read and write life sciences file formats
stardist
StarDist - Object Detection with Star-convex Shapes
surfcut-python
Python port of surfcut
vizarr
A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
webinar-notebooks
Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar