eparisis's starred repositories
containers
Bioinformatics containers
ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
helpful_commands
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
cheat-sheets
This is my personal knowledge-base. Here you'll find code-snippets, technical documentation, and command reference for various tools, and technologies.
pb-metagenomics-tools
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
wf-metagenomics
Metagenomic classification of long-read sequencing data
pipeline-nanopore-denovo-isoforms
Pipeline for de novo clustering of long transcriptomic reads
puntseq-workflows
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater (workflows)
OSC19-Linux-Workshop-Sessions
All of the workshop sessions of OSC'19 in .md and .pdf formats.
helpful_links
Links to resources related to bioinformatics and data analysis.
Bio-Courses
Tutorials for bacterial WGS
centrifuge
Classifier for metagenomic sequences
Awesome-Hacking
A collection of various awesome lists for hackers, pentesters and security researchers