eparisis's repositories
OSC19-Linux-Workshop-Sessions
All of the workshop sessions of OSC'19 in .md and .pdf formats.
puntseq-workflows
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater (workflows)
arete-fork
AMR/VF LGT focused bacterial genomics analysis workflow
Language:NextflowMIT000
helpful_commands
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
000
Kraken2-output-manipulation
Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)
Language:Python000
pb-metagenomics-tools
pb-metagenomics-tools
Language:HTMLBSD-3-Clause-Clear000
wf-metagenomics
Metagenomic classification of long-read sequencing data
Language:NextflowMPL-2.0000