enformatik's repositories
rakudobrew
Perl 6 installation manager
lorenzmie
IDL code for analyzing in-line holographic microscopy images with the Lorenz-Mie theory of light scattering
parrot
Parrot Virtual Machine
voila
Variational Inference for Langevin Equations
skdata
Data sets for machine learning in Python
XSim.cpp
simulate sequence data and complicated pedigree structures
beeswarm-1
An R package implementing bee swarm plots
beam
RNA secondary structure motif discovery
lane-detection-using-hough-transform
Lane Detection Project, using Hough Transform
road_lane_line_detection
Find lane lines on the road using Python and OpenCV, applying Canny edge detectors and Hough line transforms
Quorum
QUality Optimized Reads from the University of Maryland
copycat
Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtools to get coverage for each individual nucleotide in the genome using bedtools genomecov, then bins and organizes these coverage values into 10kb bins and outputs the coverage information in a .csv format (for upload to SplitThreader) and in a .seg format (for viewing the copy number profile in IGV)
Genomics-Bioinformatics-Rosalind-
problems list
aspell-python
Python wrapper for aspell (C extension and python version)
api-client-android
A sample Android app that calls the Google Genomics API.
alignment_sandbox
Allows users to play with alignments and mess with the scoring matrix.
Central-Dogma
A simple web application for teaching students about transcription and translation of DNA into RNA into protein.
molvwr
WebGL molecule viewer made with Babylon.js
Glimmer-MG
Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering
dmake
dmake - formerly used by openoffice.org
jnomics
Cloud Scale Genomic Analysis Framework for Hadoop
rayleighsommerfeld
IDL code for analyzing in-line holographic microscopy images with Rayleigh-Sommerfeld back-propagation
Scimm
Sequence clustering with interpolated Markov models