enformatik's repositories
ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
spyder
Official repository for Spyder - The Scientific Python Development Environment
rakudo
🦋 Rakudo Perl 6 – Perl 6 on MoarVM and the JVM
biopython
Official git repository for Biopython (converted from CVS)
biopython.github.io
Source of biopython.org website, migrated from MediaWiki
bedtools2
A powerful toolset for genome arithmetic.
canu
A single molecule sequence assembler for genomes large and small.
winpython
A free Python-distribution for Windows platform, including prebuilt packages for Scientific Python.
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
gemini
a lightweight db framework for exploring genetic variation.
beeswarm
Honeypot deployment made easy
bioperl-live
Core BioPerl 1.x code
biocaml
OCaml Bioinformatics Library
lapack
LAPACK development repository
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
biopython-wheels
Automated compilation of Python wheel binary packages for Biopython
exac_browser
Browser for ExAC consortium data
simple-lane-detection
simple lane detection using hsv filtering and hough line transforms
Padre
Offical repository of the core Padre code
cramtools
CRAM format specification and java API for read data.
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
SAM
SAM: Significance Analysis of Microarrays. Provide non-coding users to reproduce as much of the expressivity and flexibility of the R package as possible without needing to go beyond the GUI.
bioperl-db
BioPerl BioSQL ORM
ssdeep
Fuzzy hashing API and fuzzy hashing tool
Generating-and-designing-DNA
Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)