emdann

getting-a-gig

Guide for getting a gig as a tech student.

stat_rethinking_2022

Statistical Rethinking course winter 2022

bioicons

A library of free open source icons for science illustrations in biology and chemistry

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

pyranges

Performant Pythonic GenomicRanges

muon

muon is a multimodal omics Python framework

google-drive-remarkable-sync

Apps Script library for synchronising Google Drive folder with Remarkable reader.

Pando

Multiome GRN inference.

MultiVelo

Multi-omic velocity inference

pertpy

Perturbation Analysis in the scverse ecosystem.

green-algorithms-tool

cross_reference

Cross referencing for Google Docs

mudata

Multimodal Data (.h5mu) implementation for Python

cookiecutter-scverse

Cookiecutter template for scverse

milopy

Python implementation of Milo for differential abundance testing on KNN graph

pycisTopic

pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

HLCA

stimATAC_analyses_code

All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs

brainchromatin

Code used to analyze single cell RNA and ATAC sequencing in developing human brain

scEiaD

Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas

PowerAnalysisForSpatialOmics

mrvi_archive

Multi-resolution Variational Inference

genomic-features

Genomic Features in Python from BioConductor's AnnotationHub

Genes2Genes

Aligning gene expression trajectories of single-cell reference and query systems

sctk

schema

Framework for integrating heterogeneous modalities of data

hopper

Diverse sampling for single-cell datasets

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

mudatasets

Multimodal datasets, in MuData format