Genome-Resolved Metagenomics and Metatranscriptomics of R3R4 EBPR Bioreactors
This repository contains code, workflows, and metadata for assembling and analyzing co-occurring Accumulibacter populations using genome-resolved metagenomics and exploring expression profiles over an EBPR cycle with metatranscriptomics. The goal of this project was to understand expression patterns of co-existing Accumulibacter strains using genome-resolved metagenomics and time-series transcriptomics. This analysis was performed for the publication:
McDaniel E.A.#, Moya-Flores F.#, Keene Beach N., Camejo P.Y., Oyserman B.O., Kizarik M., Khor E.H., Noguera D.N., McMahon K.D. Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics. mSystems. Nov. 2020. DOI: 10.1101/2020.11.23.394700. [publication]https://journals.asm.org/doi/10.1128/mSystems.00474-21) # contributed equally