Elizabeth McDaniel's repositories
metabolisHMM
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
genomes-MAGs-database
Creation of a database of Genbank genomes including isolate reference genomes and MAGs, and parallelizing 1000s of genome searches for a specific marker
elizabethmcd.github.io
Personal website built with Quarto
ppk1_Database
Repository for assigning Accumulibacter clade designations based on ppk1 nomenclature
2019-06-27-REU-DataCarpentry
Slides and R code for teaching Intro to R for REU Data Carpentry @ UW-Madison on 2019-06-27
Abigail_EBPR_SBR
Microbial community analysis of a lab-scale SBR simulating EBPR
AcDiv
Microdiversity and population structure of Accumulibacter using genome-resolved metagenomics
algaeLakes
Searching for algae in Lake Mendota time series collab
arcadia-docker-builds
Glossary of Docker builds that are either maintained or used by Arcadia
github-pages-intro
Lesson materials for creating a personal website with Github Pages
infant_gut_microbiome
Transposons in the infant gut microbiome analysis
mcfaModule
Teaching module on genome-resolved metagenomic binning
MicDiv
Comparisons of microbial diversity within lab-scale and full-scale EBPR systems
obscurePOS
Genome-resolved metagenomics of photosynthetic EBPR
R-amplicons
Course website for MICRO 551 lessons on analyzing amplicon data in R
R1PopDynamics
Population dynamics at multiple scales of resolution of engineered bioreactor ecosystems
Sakinaw
Metagenomic and metatranscriptomic analysis of anoxic communities in Lake Sakinaw, BC
tfdA
Diversity and Distribution of tfdA marker underpinning microbial 2,4-D degradation
uTR
Detect key Units in mosaic Tandem Repeats from representative reads from the same locus