Raphael Eguchi (egurapha)

egurapha

Geek Repo

Location:New York, NY

Twitter:@ryuichirapha

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Organizations
RosettaCommons

Raphael Eguchi's starred repositories

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

vim-airline

lean & mean status/tabline for vim that's light as air

Language:Vim ScriptLicense:MITStargazers:17704Issues:223Issues:1779

alphafold

Open source code for AlphaFold.

Language:PythonLicense:Apache-2.0Stargazers:12160Issues:224Issues:840

mamba

Mamba SSM architecture

Language:PythonLicense:Apache-2.0Stargazers:11963Issues:98Issues:449

awesome-tmux

A list of awesome resources for tmux

evil

The extensible vi layer for Emacs.

Language:Emacs LispLicense:GPL-3.0Stargazers:3298Issues:43Issues:1358

ColabFold

Making Protein folding accessible to all!

Language:Jupyter NotebookLicense:MITStargazers:1818Issues:46Issues:537

voyager

🛰️ An approximate nearest-neighbor search library for Python and Java with a focus on ease of use, simplicity, and deployability.

Language:C++License:Apache-2.0Stargazers:1238Issues:14Issues:24

DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:940Issues:31Issues:130

DiffuSeq

[ICLR'23] DiffuSeq: Sequence to Sequence Text Generation with Diffusion Models

Language:PythonLicense:MITStargazers:699Issues:26Issues:79

surgeon-pytorch

A library to inspect and extract intermediate layers of PyTorch models.

Language:PythonLicense:MITStargazers:468Issues:4Issues:3

torchani

Accurate Neural Network Potential on PyTorch

Language:PythonLicense:MITStargazers:452Issues:31Issues:167

pdbfixer

PDBFixer fixes problems in PDB files

Language:PythonLicense:NOASSERTIONStargazers:446Issues:13Issues:191

python-blosc

A Python wrapper for the extremely fast Blosc compression library

Language:PythonLicense:NOASSERTIONStargazers:348Issues:16Issues:112

awesome-molecular-generation

Awesome papers related to generative molecular modeling and design.

pyTorchChamferDistance

Implementation of the Chamfer Distance as a module for pyTorch

Language:C++License:MITStargazers:268Issues:4Issues:0

tmux-nova

tmux theme

Language:ShellLicense:MITStargazers:170Issues:3Issues:29

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

Language:PythonLicense:Apache-2.0Stargazers:145Issues:14Issues:167

bgflow

Boltzmann Generators and Normalizing Flows in PyTorch

Language:Jupyter NotebookLicense:MITStargazers:129Issues:5Issues:23

arpeggio

Calculation of interatomic interactions in molecular structures

Language:PythonLicense:GPL-3.0Stargazers:66Issues:8Issues:23

cubenet

3D Roto-translation equivariant convolutions

Language:PythonLicense:MITStargazers:55Issues:5Issues:2

Rosetta-DL

A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons

BLISS

Large Scale Search Index

Language:PythonLicense:Apache-2.0Stargazers:22Issues:2Issues:1

geometric_algebra_attention

Geometric algebra attention mechanism for tensorflow, keras, pytorch, and jax

Language:PythonLicense:MITStargazers:19Issues:3Issues:4

QuickSES

Tool to compute molecular Solvent Excluded Surface meshes on the GPU using CUDA

Language:C++License:MITStargazers:14Issues:5Issues:3

vim-color-scheme-screenshots

A collection of screenshots for vim color schemes

Stargazers:11Issues:0Issues:0

tmux-doom-one-dark

doom-one-dark theme for tmux

Language:ShellLicense:MITStargazers:9Issues:3Issues:0

g2g_optimization

graph-to-graph translation using hierarchical graph structure with iterations

Language:PythonLicense:MITStargazers:8Issues:2Issues:0

coordinates-compression

This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

Language:JavaLicense:Apache-2.0Stargazers:2Issues:0Issues:0

cath-funfhmmer

Split GeMMA clusters into functionally coherent alignments (FunFams)

Language:PerlStargazers:2Issues:0Issues:0