Raphael Eguchi (egurapha)

egurapha

Geek Repo

Location:New York, NY

Twitter:@ryuichirapha

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Organizations
RosettaCommons

Raphael Eguchi's starred repositories

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

taichi

Productive, portable, and performant GPU programming in Python.

Language:C++License:Apache-2.0Stargazers:25153Issues:389Issues:2645

vim-airline

lean & mean status/tabline for vim that's light as air

Language:Vim ScriptLicense:MITStargazers:17703Issues:223Issues:1779

annoy

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

Language:C++License:Apache-2.0Stargazers:12975Issues:319Issues:395

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:12061Issues:338Issues:288

alphafold

Open source code for AlphaFold.

Language:PythonLicense:Apache-2.0Stargazers:10669Issues:204Issues:732

jedi-vim

Using the jedi autocompletion library for VIM.

Language:PythonLicense:MITStargazers:5262Issues:113Issues:787

evil

The extensible vi layer for Emacs.

Language:Emacs LispLicense:GPL-3.0Stargazers:3298Issues:43Issues:1358

pytorchviz

A small package to create visualizations of PyTorch execution graphs

Language:Jupyter NotebookLicense:MITStargazers:3117Issues:31Issues:63

ColabFold

Making Protein folding accessible to all!

Language:Jupyter NotebookLicense:MITStargazers:1818Issues:46Issues:537

DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:940Issues:31Issues:130

pytorch-lr-finder

A learning rate range test implementation in PyTorch

Language:PythonLicense:MITStargazers:902Issues:14Issues:61

ncsn

Noise Conditional Score Networks (NeurIPS 2019, Oral)

Language:PythonLicense:GPL-3.0Stargazers:647Issues:9Issues:11

surgeon-pytorch

A library to inspect and extract intermediate layers of PyTorch models.

Language:PythonLicense:MITStargazers:467Issues:4Issues:3

torchani

Accurate Neural Network Potential on PyTorch

Language:PythonLicense:MITStargazers:452Issues:31Issues:167

python-blosc

A Python wrapper for the extremely fast Blosc compression library

Language:PythonLicense:NOASSERTIONStargazers:348Issues:16Issues:112

awesome-molecular-generation

Awesome papers related to generative molecular modeling and design.

pyTorchChamferDistance

Implementation of the Chamfer Distance as a module for pyTorch

Language:C++License:MITStargazers:268Issues:4Issues:0

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:146Issues:10Issues:118

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

Language:PythonLicense:Apache-2.0Stargazers:145Issues:14Issues:167

bgflow

Boltzmann Generators and Normalizing Flows in PyTorch

Language:Jupyter NotebookLicense:MITStargazers:128Issues:5Issues:23

arpeggio

Calculation of interatomic interactions in molecular structures

Language:PythonLicense:GPL-3.0Stargazers:66Issues:8Issues:23

AdaptiveKDE

Python module for adaptive kernel density estimation

Language:PythonLicense:Apache-2.0Stargazers:56Issues:6Issues:7

cubenet

3D Roto-translation equivariant convolutions

Language:PythonLicense:MITStargazers:55Issues:5Issues:2

awkde

Adaptive Width KDE with Gaussian Kernels

Language:PythonLicense:MITStargazers:37Issues:4Issues:7

Rosetta-DL

A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons

Language:C++License:Apache-2.0Stargazers:26Issues:40Issues:0

vim-color-scheme-screenshots

A collection of screenshots for vim color schemes

Stargazers:11Issues:0Issues:0

g2g_optimization

graph-to-graph translation using hierarchical graph structure with iterations

Language:PythonLicense:MITStargazers:8Issues:2Issues:0

coordinates-compression

This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

Language:JavaLicense:Apache-2.0Stargazers:2Issues:0Issues:0