edwenger

2019-nCoV

Visualize epidemic cases in China

boost-odeint-test

An exploratory project using boost::numeric::odeint

action-runner-demo

bevy_abm

Exploration of demographic simulation + visualization with Bevy Engine

binder-jupyter

A test repository for Binder and JupyterHub exploration

dots-rabbit-test

Exploration of ECS/DOTS pattern in Unity for demographic simulation

phaser-multiplayer

Explore server-side logic for multiplayer HTML5 games

polio-toy-model

Simple S, I, R with constant population, tracking individual infections and constructing lineage trees

bevy_life

Generic cellular automaton plugin for bevy.

cml_base_case

cml_dvc_case

DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

docker-explore

An Ubuntu 18.04 pre-built EMOD executable and the minimal environment in which to run it

docker-pybind11-binder

Docker environment to explore pybind11 and binder

Ecosystem-2

emod-demo

A collection of Jupyter notebooks as examples of using EMOD libraries from Python

emodlib

Python bindings of ported EMOD C++ libraries for disease-transmission modeling

emodpy-hiv-calibra-demo

epipack

Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.

epipack-spatial-demo

flecs-demo

Standalone Flecs project with embedded graphics modules

kubernetes-in-codespaces

Kubernetes development cluster in GitHub Codespaces

mesa

Mesa is a agent-based modeling framework in Python

pybind_embed_test

Test project using pybind11 to explore modularity, extensibility, and configurability

pybind_test

A test project using pybind11 and CMake on EMOD-relevant objects

pycms

Expose CMS functionality to Python via Python.NET

rcpp_test

A test project using Rcpp on EMOD-relevant objects

simpy_test

SmartVA-Analyze

SmartVA-Analyze Desktop Application

terra-docker