drisso

bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

rnaseq_meetup

archive-RUVSeq

Archived version of RUVSeq

archive-SingleCellExperiment

This is the archived version of SingleCellExperiment with the history before Bioc submission.

archive-zinbwave

Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave

archive-scRNAseq

Archived version of the scRNAseq Bioconductor package. All future development will be done at https://github.com/LTLA/scRNAseq

bioc2019singlecell

x94

Code and data to reproduce the analysis of Naka et al.

compgen_berlin2016

archive-EDASeq

Archived version of EDASeq

deconsgl

Deconvolution of RNA-Seq Via Sparse Group Lasso

reproducible_research

Topics on reproducible research

SingleCellMultiModal

Single Cell multimodal data scripts for downloading datasets

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

BiocNeighbors

Clone of the Bioconductor repository for the BiocNeighbors package.

canazei

Slides for 2018 Winter School

DepLabData

clean some datasets

easy-data

easy access to benchmark datasets

fastpca

filtergenes

filtering

fletcher2017data

Data from the Fletcher et al (2017) paper in SingleCellExperiment format

JSM2016slides

Links to slides for talks at the 2016 Joint Statistical Meetings in Chicago

LoomExperiment

myfilter

This is an example package for the d-bug tutorial

prova

rmdtemplates

R markdown templates that I find useful

sc2meta

Methods used in the article "Assessment of single cell RNA-seq statistical methods on microbiome data"

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

striatum

Analysis of DAT cells