drisso

SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave

RUVSeq

Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the official development version.

learn2count

Structure learning based for zero-inflated negative binomial data

ThrivingInBioinformatics

zinb_analysis

Data analysis and simulations for the ZINB-WaVE paper

mbkmeans

K-means clustering for large single-cell datasets

EDASeq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

awst

Asymmetric Winsorization per Sample Transformation

awst_analysis

Code to reproduce the analyses of the AWST paper

scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.

CSAMA

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

structure_learning

Code to reproduce the analyses of Hue Nguyen et al. (2020)

bioc_coc_multilingual

Multilingual version of the Bioconductor Code of Conduct

Bioconductor20YearsSlides

Carousel of xaringan slides to celebrate 20 years of the Bioconductor project.

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

czi_demo

CZI demo: Large-scale clustering in Bioconductor

EuroBioC2023

ISCB.Course

Bioconductor course at ISCB44

ISMB.OSCA

large-scale-data-base

Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr

miniBiocWorkshop

A mini-workshop for debugging purposes

my_workshop

NewWave-script

Code used for NewWave article

proteomics_course

PsiNorm

psinorm

renku-project-template

Custom project template for Renku that uses Bioconductor docker images

ridge

scalablePCA

testing

whitePaper

Manubot for white paper