dowdlelt / 2018_multiband_talk

Examples from Nuts and Bolts Multiband Talk

2018_multiband_talk

Examples from Nuts and Bolts Multiband Talk

Ernst angle calculator can be found here: http://www.mritoolbox.com/ErnstAngle.html

Details on Various ICA Toolboxes:

FSL FIX: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX

GIFT, Group ICA: http://mialab.mrn.org/software/gift/

ICA-AROMA: https://github.com/maartenmennes/ICA-AROMA

SOCK: https://www.nitrc.org/projects/sock/

Papers Referenced:

Slide 4: Polimeni JR, Bhat H, Witzel T, Benner T, Feiweier T, Inati SJ, Renvall V, Heberlein K, Wald LL. Reducing sensitivity losses due to respiration and motion in accelerated echo planar imaging by reordering the autocalibration data acquisition. Magn Reson Med. 2016;75(2):665-79. Epub 2015/03/27. doi: 10.1002/mrm.25628. PubMed PMID: 25809559; PMCID: PMC4580494.

https://layerfmri.com/2018/03/17/partial-fourier-imaging-at-high-resolutions/

Slide 6:

Barth M, Breuer F, Koopmans PJ, Norris DG, Poser BA. Simultaneous multislice (SMS) imaging techniques. Magn Reson Med. 2016;75(1):63-81. Epub 2015/08/27. doi: 10.1002/mrm.25897. PubMed PMID: 26308571; PMCID: PMC4915494.

Slide 10:

https://www.dataforth.com/anti-aliasing.aspx

Slide 13:

https://practicalfmri.blogspot.com/2016/02/starting-points-for-sms-epi-at-3-t.html

Slide 14:

https://www.biorxiv.org/content/biorxiv/early/2016/10/17/081604.full.pdf

Slide 15:

Engel S. Retinotopic organization in human visual cortex and the spatial precision of functional MRI. Cerebral Cortex. 1997;7(2):181-92. doi: 10.1093/cercor/7.2.181.

Slide 16:

Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, Van Essen DC. The Human Connectome Project's neuroimaging approach. Nat Neurosci. 2016;19(9):1175-87. doi: 10.1038/nn.4361. PubMed PMID: 27571196.

Slide 17: Google Image Search for whole-brain fmri

https://www.researchgate.net/publication/279299842_The_Pleasure_of_Revenge_Retaliatory_Aggression_Arises_from_a_Neural_Imbalance_Toward_Reward/figures?lo=1&utm_source=google&utm_medium=organic

Vaden KI, Jr., Gebregziabher M, Kuchinsky SE, Eckert MA. Multiple imputation of missing fMRI data in whole brain analysis. Neuroimage. 2012;60(3):1843-55. Epub 2012/04/17. doi: 10.1016/j.neuroimage.2012.01.123. PubMed PMID: 22500925; PMCID: PMC3328786.

Slide 20-23: Todd N, Josephs O, Zeidman P, Flandin G, Moeller S, Weiskopf N. Functional Sensitivity of 2D Simultaneous Multi-Slice Echo-Planar Imaging: Effects of Acceleration on g-factor and Physiological Noise. Frontiers in Neuroscience. 2017;11. doi: 10.3389/fnins.2017.00158.

Slide 25:

McDowell AR, Carmichael DW. Optimal repetition time reduction for single subject event-related functional magnetic resonance imaging. Magn Reson Med. 2018. Epub 2018/09/20. doi: 10.1002/mrm.27498. PubMed PMID: 30230635.

Slide 26-29:

Demetriou L, Kowalczyk OS, Tyson G, Bello T, Newbould RD, Wall MB. A comprehensive evaluation of increasing temporal resolution with multiband-accelerated protocols and effects on statistical outcome measures in fMRI. Neuroimage. 2018;176:404-16. Epub 2018/05/09. doi: 10.1016/j.neuroimage.2018.05.011. PubMed PMID: 29738911.

Slide 31:

Barth M, Breuer F, Koopmans PJ, Norris DG, Poser BA. Simultaneous multislice (SMS) imaging techniques. Magn Reson Med. 2016;75(1):63-81. Epub 2015/08/27. doi: 10.1002/mrm.25897. PubMed PMID: 26308571; PMCID: PMC4915494.

Slide 32:

http://www.mritoolbox.com/ErnstAngle.html

Slide 45,46:

Accurate autocorrelation modeling substantially improves fMRI reliability - https://arxiv.org/abs/1711.09877