dmichalak

recovar

NIHCloudLabAWS

Documentation and tutorials on using AWS for biomedical research

OccuPy

friture

Real-time audio visualizations (spectrum, spectrogram, etc.)

Audio-Spectrum-Analyzer-in-Python

A series of Jupyter notebooks and python files which stream audio from a microphone using pyaudio, then processes it.

in-formant

software for real-time voice analysis

TomoNet

TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing

Chimerax-clix

An intelligent command line interface for ChimeraX

tomodrgn

Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms

pyrepo-copier

Template for creating a new python repository

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

awesome-napari-plugins-that-are-not-on-the-napari-hub-yet

warp

Ais

TemperamentStudio

Temperament Studio - a program that lets you experiment with different musical tuning schemes

surforama

a tool for using surfaces to explore volumetric data in napari

cryoet-scripts

Miscellaneous scripts for processing cryo-ET data

starter

Starter template for LazyVim

DeepDeWedge

Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms

Ensemble-reweighting-using-Cryo-EM-particles

MotionCor3

Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography

AreTomo2

DynaMight

Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

chimerax-trimmings

Useful aliases and startup settings for ChimeraX

pytom-match-pick

GPU template matching for cryo-ET

colabseg

Jupyter-based tool for membrane segmentation manipulation

cryohub

IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.

starfile.vim

VIM syntax for STAR/CIF files.

fourier-guide

An interactive guide to the Fourier-Transform.

cryotomosim_CTS

cryo-EM tomogram simulator