Dicerna Discovery's repositories
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
aws-genomics-workflows
Genomics Workflows on AWS
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
DevNet
The DevNet project on github stores the PacBio DevNet website.
dicerna
Config files for my GitHub profile.
dicerna-rnaseq
nf-core rnaseq pipeline adpated to dicerna aws
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
GGGenome
塩基配列を高速に検索するウェブサービス
github-final-project
IBM git and github class final project
mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
mlp-regression-template
Example repo to kickstart integration with mlflow pipelines.
nfcamp-tutorial
A tutorial for DLS-2 migration
practical-machine-learning-with-python
Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.
PyHillFit
Code to load and fit dose response curves in a Bayesian inference framework
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rnavar
gatk4 RNA variant calling pipeline
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
smrnaseq
A small-RNA sequencing analysis pipeline
tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
tuxedo-nf
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown