dfci / oncotreenx

light networkx wrapper around the oncotree data structure

oncotreenx

light wrapper networkx wrapper around the oncotree data structure

installing

The library can be installed using pip and the github package path.

pip install git+https://github.com/jim-bo/oncotreenx.git

examples

# import
import oncotreenx

# create graph.
g = oncotreenx.build_oncotree()

# get the ancestor.
p = get_basal(g, "CCHDM")

# make sure it is correct.
assert 'BONE' == p