demianw

contrastive-reg

lark

Lark is a parsing toolkit for Python, built with a focus on ergonomics, performance and modularity.

nibabel

Python package to access a cacophony of neuro-imaging file formats

B2RIO

LovelyPlots

Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.

ca_09_2020

CommonDataModel

Definition and DDLs for the OMOP Common Data Model (CDM)

neurolang_web

A web API and UI for the NeuroLang library.

cifti

Creation of new CIFTI files and the reading and manipulating of existing ones

sulcal_neuroanatomy

MUSE

A library for Multilingual Unsupervised or Supervised word Embeddings

dmipy

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

distributed

A distributed task scheduler for Dask

logpar

Groupwise Structural Parcellation of the Whole Cortex: A Logistic Random Effects Model Based Approach

nistats

Modeling and statistical inference on fMRI data in Python

tract_querier

Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis

tokyo

A Cython wrapper to BLAS and LAPACK

tokyo

A Cython wrapper to BLAS and LAPACK

scipy

SciPy library main repository

mayavi

3D visualization of scientific data in Python

cython

The most widely used Python to C compiler

numpy

The fundamental package for scientific computing with Python.

scikit-learn

scikit-learn: machine learning in Python

AppLauncher

Simple and small program allowing to set the environment of any executable.

macvim

Vim - the text editor - for Mac OS X

tractographyGaussianProcesses

This software implements the clustering method described in D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, and R. Deriche. Unsupervised white matter fiber clustering and tract probability map generation: Applications of a gaussian process framework for white matter fibers. NeuroImage, 51(1):228–241, 2010. If you use it you MUST cite this journal publication.

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

nipy

Neuroimaging in python

nipy

Neuroimaging in Python FMRI analysis package

PyMVPA

MultiVariate Pattern Analysis in Python