Demian Wassermann's repositories
tract_querier
Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis
tractographyGaussianProcesses
This software implements the clustering method described in D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, and R. Deriche. Unsupervised white matter fiber clustering and tract probability map generation: Applications of a gaussian process framework for white matter fibers. NeuroImage, 51(1):228–241, 2010. If you use it you MUST cite this journal publication.
Arpeggio
Parser interpreter based on PEG grammars written in Python
batchspawner
Custom Spawner for Jupyterhub to start servers in batch scheduled systems
brainhack-paris.github.io
Brainhack Paris site
chicken
a global optimization example + landmark distances
distributed
Distributed computation in Python
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
mne-python
MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
nibabel
Python package to access a cacophony of neuro-imaging file formats
readthedocs.org
The source code that powers readthedocs.org
seaborn
Statistical data visualization using matplotlib