ddiez

cd-hit

Dockerfile for cd-hit

rTRM

Identification of transcriptional regulatory modules from PPI networks

immgen.db

rTRMui

bedtools

Dockerfile for bedtools

biodev

Bioinformatics development environment

biodevtools

Support classes to use bioinformatic tools in R using Docker

bowtie2

Dockerfile for bowtie2

centipede-ms

Run msCentipede in a docker container

chaos

codelink

An R package for the manipulation of Codelink microarray data

colourpicker

A colour picker widget for Shiny apps, RStudio, R-markdown, and 'htmlwidgets'

dataset

Small data sets for testing software

dockertools

Recipes for building docker images with tools I use

fasttree

Dockerfile for FastTree

ggplot2

An implementation of the Grammar of Graphics in R

hmmertools

Run HMMER from R using Docker

language-r

An Atom language package for R.

macs

Dockerfile for MACS2

memetools

Run MEME from R using Docker

mrbayes

Dockerfile for MrBayes

nagoya_course_2017_book

Handbook for the topics covered in the Nagoya Bioinformatics course 2017

ngstools

Miscellaneous tools for the analysis of NGS data

rmotifx

Discovery of biological sequence motifs in R

seqminer

seqminer_perl

shiny

simtrn

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

xml2

Bindings to libxml2