dawei1203's repositories
Co-expression-analysis-using-Camoco
Co-expression analysis using Camoco
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
amfinder
The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.
GEMMA
Genome-wide Efficient Mixed Model Association
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bio_code
this project is content about my bioinformation analysis code .it may have R,Shell,Python.
GWAS_Flow
GPU accelerated GWAS framework based on TensorFlow
PAST
Pathway Association Study Tool (PAST)
nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MaizeSNPDB
A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
JWAS.jl
Julia for Whole-genome Analysis Software
ChronoRootControl
Web interface controling ChronoRoot image acquisition module
msfs_teo
mSFS using a teosinte natural population
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
lettuce2020
Codes for the lettuce resequencing project in 2020
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
kILBIL
Custom code used in the manuscript:
xpclr
Code to compute the XP-CLR statistic to infer natural selection
LCV
Software implementing the Latent Causal Variable Model
Transcriptome
The expression data on DAP15 maize kernel of the 368 association panel, quantified based on RNA-seq.
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
NGS-analysis
二代测序数据分析
RNA-Seq-Model-Organism-Arabidopsis-thaliana
RNA Seq Model Organism Arabidopsis thaliana using paired end reads