dawei1203's repositories
amfinder
The AMFinder suite contains Python scripts that enable high-throughput annotation of mycorrhizal structures from pictures of ink-stained plant roots, as well as a fully-featured browser for manual curation and heatmap generation.
bio_code
this project is content about my bioinformation analysis code .it may have R，Shell，Python.
Camoco
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
ChronoRootControl
Web interface controling ChronoRoot image acquisition module
Co-expression-analysis-using-Camoco
Co-expression analysis using Camoco
GEMMA
Genome-wide Efficient Mixed Model Association
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
GWAS_Flow
GPU accelerated GWAS framework based on TensorFlow
JWAS.jl
Julia for Whole-genome Analysis Software
kILBIL
Custom code used in the manuscript:
LCV
Software implementing the Latent Causal Variable Model
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
lettuce2020
Codes for the lettuce resequencing project in 2020
MaizeSNPDB
A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
msfs_teo
mSFS using a teosinte natural population
nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
NGS-analysis
二代测序数据分析
PAST
Pathway Association Study Tool (PAST)
RNA-Seq-Model-Organism-Arabidopsis-thaliana
RNA Seq Model Organism Arabidopsis thaliana using paired end reads
Transcriptome
The expression data on DAP15 maize kernel of the 368 association panel, quantified based on RNA-seq.
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
xpclr
Code to compute the XP-CLR statistic to infer natural selection