Dave Tang's repositories
machine_learning
Machine learning in R
defining_genomic_regions
Define regions in the genome
research_parasite
How research parasites can download your data!
learning_random_forest
Notes and code for learning Random Forests
reproducible_bioinformatics
Workshop material for BioC Asia 2019
human_phenotype_ontology
Resources for working with the Human Phenotype Ontology
scRNA-seq_notes
A list of scRNA-seq analysis tools
Cancer_notes
A continually expanding collection of cancer genomics notes and data
learning_awk
Finally learning AWK instead of being annoyed at its syntax
archs4_heatmap
Gene heatmap using ARCHS4
multimapping
Investigate the multimapping behaviour of sequence aligners
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
bookdown-demo
A minimal book example using bookdown
git-for-science
A quick introduction to version control with Git and GitHub
learning_ruby
Learning Ruby out of necessity
learning_wdl
Learning the Workflow Description Language
lohhla
Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
markdown-toc-bash
Bash script to generate table of contents from markdown file (README.md)
palmerpenguins-useR-2022
Slides from our talk at the useR 2022 conference on "The Untold Story of palmerpenguins"
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
simulation
Simulations.
tumps
tumps: tumor purity simulation