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Dave Tang's starred repositories

import

An Import Mechanism For R

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litedown

A lightweight version of R Markdown

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webr

The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.

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epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

Language:NextflowMIT3700

terminalizer

🦄 Record your terminal and generate animated gif images or share a web player

Language:JavaScriptMIT1506000

T1K

T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

Language:CMIT4000

vim-gitgutter

A Vim plugin which shows git diff markers in the sign column and stages/previews/undoes hunks and partial hunks.

Language:Vim ScriptMIT830200

the-book-of-secret-knowledge

A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.

vim-instant-markdown

Instant Markdown previews from Vim

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vim-markdown

Markdown Vim Mode

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install-node

Simple one-liner shell script that installs official Node.js binaries

Language:ShellMIT13700

ggbump

A geom for ggplot to create bump plots

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ggsankey

Make sankey, alluvial and sankey bump plots in ggplot

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sedtris

Tetris in sed

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WhatTheDuck

WhatTheDuck is an open-source web application built on DuckDB. It allows users to upload CSV files, store them in tables, and perform SQL queries on the data.

Language:VueMIT42400

tidyseurat

Seurat meets tidyverse. The best of both worlds.

Language:R14300

minipileup

Simple pileup-based variant caller

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harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

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ggblanket

Simplify ggplot2 visualisation

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zenith

Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage

Language:RustMIT247900

dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

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ShortCake

A docker image for single-cell analysis

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PTATO

PTa Analysis TOolkit

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Piwigo

Manage your photos with Piwigo, a full featured open source photo gallery application for the web. Star us on Github! More than 200 plugins and themes available. Join us and contribute!

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aws-for-bioinformatics

AWS for Bioinformatics Researchers

Language:Jupyter NotebookApache-2.011000

pointer

A very simple RevealJS plugin extension that adds support for switching the cursor to a 'pointer' style element while presenting.

MIT2700

quarto-webr

Quarto Extension to Embed webR for HTML Documents, RevealJS, Websites, Blogs, and Books.

Language:JavaScript35300

workshop_quarto_slides

Workshop for the VVSOR on creating slides with Quarto. The workshop is mainly about Revealjs.

Language:HTMLMIT1100

professional-programming

A collection of learning resources for curious software engineers

Language:PythonMIT4570500

dorothea

R package to access DoRothEA's regulons

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