Tien-chen (Dennis) Lin's repositories
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioinformatics_online
Resource list and preparation instructions for online learning and teaching for Bioinformatics
Brainformatics
This Repository is the collection of developing tools and programs potentially used for analyzing single cell NGS data in BI-Harvard Human Brain Project
scRNA-seq_notes
A list of scRNA-seq analysis tools
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
ctv-AnomalyDetection
CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒
EphysExtraction
Code to extract electrophysiological parameters of neurons.
For-Data-Science-Beginners
Set of 📝 with 🔗 to help those who are Data Science beginners 🤖
HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
Intro-to-R-online-Catalyst
Contains materials for an online version of the Introduction to R
napari-training-course
Lectures for a napari training course
neubias_academy_biapy
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
Onboarding
This repository contains the onboarding resources and exercises that are recommended for when you join the Whitaker Lab.
OrchestratingSingleCellAnalysis
Content for the OSCA Book.
rethinking
Statistical Rethinking course and book package
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
statistical-rethinking
A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.
Training-modules
Materials for short, half-day workshops
WhitakerLabProjectManagement
This repository contains issues related to the management of all Whitaker Lab projects